species:   Rhsol
pid:       PID0597
parent:    Rhi-milR-137
paralog:   
locus:     KB317759.1:4964-5055
matures:   ['UGGAGCUGGAGGACUAAUUUUG', 'AUCUGUGGUGCCUACAGGCCUCCUGC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317759.1:4964-5055

5 out of bounds
22 alignments
16 proper strand
9 stranded perfect matches

        *************************                      *****************************        
UUUGAGGUGCUGGAGCUGGAGGACUAAUUUUGCUGUAUAUUGACAUGCAUGUGCUGUAAUCUGUGGUGCCUACAGGCCUCCUGCAACCCAAU
.(((.(((((.(((((((.(((((((...((((.((((((........)))))).))))....)))).))).)))..)))).)).)))))).
----------UGGAGCUGGAGGACUAAUUUUG------------------------------------------------------------ l=22 a=0 c
----------------------------------------------------------AUCUGUGGUGCCUACAGGCCUCCUGC-------- l=26 a=0 c*
----------UGGAGCUGGAGGACUAAUUUUGC----------------------------------------------------------- l=23 a=8 ma
---------------------------------------------------------AAUCUGUGGUGCCUACAGGCCUCCUGC-------- l=27 a=0 ma*

UUUGAGGUGCUGGAGCUGGAGGu--------------------------------------------------------------------- l=23 a=1 
----------UGGAGCUGGAGGACUAAUUUUGC----------------------------------------------------------- l=23 a=8 (ma)
----------UGGAGCUGGAGGACUAAUUUUGCa---------------------------------------------------------- l=24 a=4 
----------UGGAGCUGGAGGACUAAUUUUGCg---------------------------------------------------------- l=24 a=2 
---------------------------------------------------UGCUGUAAUCUGUGGUGCCUACAG----------------- l=24 a=1 

mb-01111
ax-1001011
ku-01
ss-111110101000
fn-101
